Proteomics - Downloads
The following tools for protein mass spectromtry / Proteomics (project
protein-ms
at Sourceforge) are provided by me:
-
mres2x
A tool for conversion of Mascot™ results in a tabular format for further processing.
The link to the corresponding
publication
and the link to
mres2x.
-
wiff2dta
A tool for conversion of Applied Biosystem's MS and MSn data (wiff format) into DTA, PMF, MGF or mzXML.
The link to the corresponding
publication
and the link to
wiff2dta.
-
theospec
A tool for generating artificial (in silico) MS/MS spectra data for a given peptide sequence.
The link to the corresponding
publication
and the link to
theospec.
-
Quant
Statistical Methods for precise and accurate MS-based protein-level quantification
using iTRAQ™. Sure, the peptide-level is integrated, too.
Available are the MathLab scripts as well as an implementation for Windows (Quant for Windows)
and
a portable Java implementation named jTraqX,
both designed for mass data processing.